indexgvcf

This tool creates an index for vcf/g.vcf/g.vcf.gz files

Quick Start

$ pbrun indexgvcf --input input.g.vcf

Compatible CPU GATK4 command

$ gatk IndexFeatureFile -F input.g.vcf

Options

Options

Description

--input (required)

Path to the vcf/g.vcf/g.vcf.gz file to be indexed.